Institute of Science Tokyo · Institute for Advanced Studies · 教授

Research keywordsオミクス・統計科学・遺伝子ネットワーク・マルチオミクス・バイオインフォマティクス・一細胞解析

Research fieldsFrontiers of informatics・Informatics・Life / Health / Medical informatics・Biological Sciences・Biological Sciences・Integrated Disciplines・Oncology・Tumor biology

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• DeepKINET: a deep generative model for estimating single-cell RNA splicing and degradation rates. 2024.09; 25 (1): 229. ( PubMed , DOI )2024
• [Koichiro Majima,Yasuhiro Kojima,Kodai Minoura,Ko Abe,Haruka Hirose,Teppei Shimamura]. LineageVAE: Reconstructing Historical Cell States and Transcriptomes toward Unobserved Progenitors. 2024.08; ( PubMed , DOI )2024
• [Yasuhiro Kojima,Shinji Mii,Shuto Hayashi,Haruka Hirose,Masato Ishikawa,Masashi Akiyama,Atsushi Enomoto,Teppei Shimamura]. Single-cell colocalization analysis using a deep generative model 2024.02; 15 (2): 180-192.e7. ( PubMed , DOI )2024
• [Yasuhiro Kojima,Yuko Arioka,Haruka Hirose,Shuto Hayashi,Yusuke Mizuno,Keiki Nagaharu,Hiroki Okumura,Masato Ishikawa,Kohshi Ohishi,Yutaka Suzuki,Norio Ozaki,Teppei Shimamura]. Inferring extrinsic factor-dependent single-cell transcriptome dynamics using a deep generative model 2024.04; ( DOI )2024

• 最小単位オミクス総合解析による乳がん組織多様性の解明
• 常在細菌叢の機能理解に向けた疾患関連細菌叢アトラスの創出
• 領域研究「細胞外情報を統御するマルチモーダルECM」の統括と運営
• SHH型髄芽腫における異常RNAプロセシングの解明

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