Saitama University · Graduate School of Science and Engineering · 准教授

Research keywordsmolecular dynamics simulation・enhanced sampling・free-energy calculation・protein conformational dynamics・coarse-grained modeling・weighted ensemble simulation・AFM image reconstruction・protein language models

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• AFM-Fold: Rapid Reconstruction of Protein Conformations from AFM Images2025 · 2025年11月
• Mechanistic Interpretability of Fine-Tuned Protein Language Models for Nanobody Thermostability Prediction2025 · 2025年12月
• Explicit description of viral capsid subunit shapes by unfolding dihedrons2024 · Communications Biology, 2024年11月,
• GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models2024 · The Journal of Physical Chemistry B, 2024年06月,

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